goseq
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see goseq.
Gene Ontology analyser for RNA-seq and other length biased data
Bioconductor version: 3.9
Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data
Author: Matthew Young
Maintainer: Matthew Young <my4 at sanger.ac.uk>, Nadia Davidson <nadia.davidson at mcri.edu.au>
Citation (from within R, enter
citation("goseq")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("goseq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("goseq")| goseq User's Guide | R Script | |
| Reference Manual |
Details
| biocViews | GO, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription |
| Version | 1.36.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (14 years) |
| License | LGPL (>= 2) |
| Depends | R (>= 2.11.0), BiasedUrn, geneLenDataBase(>= 1.9.2) |
| Imports | mgcv, graphics, stats, utils, AnnotationDbi, GO.db, BiocGenerics |
| System Requirements | |
| URL |
See More
| Suggests | edgeR, org.Hs.eg.db, rtracklayer |
| Linking To | |
| Enhances | |
| Depends On Me | rgsepd |
| Imports Me | ChAMP, ideal, PathwaySplice, SMITE |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | goseq_1.36.0.tar.gz |
| Windows Binary | goseq_1.36.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | goseq_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/goseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/goseq |
| Bioc Package Browser | https://code.bioconductor.org/browse/goseq/ |
| Package Short Url | https://bioconductor.org/packages/goseq/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |