affyPara
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see affyPara.
Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays
Bioconductor version: 3.9
The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.
Author: Markus Schmidberger <schmidb at ibe.med.uni-muenchen.de>, Esmeralda Vicedo <e.vicedo at gmx.net>, Ulrich Mansmann <mansmann at ibe.med.uni-muenchen.de>
Maintainer: Markus Schmidberger <MSchmidberger at freenet.de>
citation("affyPara")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affyPara")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affyPara")| Parallelized affy functions for preprocessing | R Script | |
| Simulation Study for VSN Add-On Normalization and Subsample Size | R Script | |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | Microarray, Preprocessing, Software |
| Version | 1.44.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
| License | GPL-3 |
| Depends | R (>= 2.5.0), methods, affy(>= 1.20.0), snow (>= 0.2-3), vsn(>= 3.6.0), aplpack (>= 1.1.1), affyio |
| Imports | |
| System Requirements | |
| URL | http://www.ibe.med.uni-muenchen.de |
See More
| Suggests | affydata |
| Linking To | |
| Enhances | affy |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | affyPara_1.44.0.tar.gz |
| Windows Binary | affyPara_1.44.0.zip |
| Mac OS X 10.11 (El Capitan) | affyPara_1.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/affyPara |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affyPara |
| Bioc Package Browser | https://code.bioconductor.org/browse/affyPara/ |
| Package Short Url | https://bioconductor.org/packages/affyPara/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |