MultiDataSet
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MultiDataSet.
Implementation of MultiDataSet and ResultSet
Bioconductor version: 3.9
Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and ResultSet. MultiDataSet is designed for integrating multi omics data sets and ResultSet is a container for omics results. This package contains base classes for MEAL and rexposome packages.
Author: Carlos Ruiz-Arenas [aut, cre], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut]
Maintainer: Carlos Ruiz-Arenas <carlos.ruiz at isglobal.org>
citation("MultiDataSet")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MultiDataSet")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MultiDataSet")| Adding a new type of data to MultiDataSet objects | HTML | R Script |
| Introduction to MultiDataSet | HTML | R Script |
| Using MultiDataSet with third party R packages | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataRepresentation, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | file LICENSE |
| Depends | R (>= 3.3), Biobase |
| Imports | BiocGenerics, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment, methods, utils, ggplot2, ggrepel, qqman, limma |
| System Requirements | |
| URL |
See More
| Suggests | brgedata, minfi, minfiData, knitr, rmarkdown, testthat, omicade4, iClusterPlus, GEOquery, MultiAssayExperiment, BiocStyle, RaggedExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | MEAL |
| Imports Me | omicRexposome |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MultiDataSet_1.12.0.tar.gz |
| Windows Binary | MultiDataSet_1.12.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | MultiDataSet_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MultiDataSet |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MultiDataSet |
| Bioc Package Browser | https://code.bioconductor.org/browse/MultiDataSet/ |
| Package Short Url | https://bioconductor.org/packages/MultiDataSet/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |