scRNAseq
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see scRNAseq.
A Collection of Public Single-Cell RNA-Seq Datasets
Bioconductor version: 3.8
Gene-level read counts of three public scRNA-seq datasets. See vignette for details.
Author: Davide Risso [aut, cre, cph], Michael Cole [aut]
Maintainer: Davide Risso <risso.davide at gmail.com>
Citation (from within R, enter
citation("scRNAseq")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scRNAseq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scRNAseq")| scRNAseq | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, ExpressionData, RNASeqData, SequencingData |
| Version | 1.8.0 |
| License | CC0 |
| Depends | R (>= 3.3), SummarizedExperiment |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | simpleSingleCell |
| Imports Me | |
| Suggests Me | clusterExperiment, iSEE, scFeatureFilter, scone, SingleCellExperiment, singleCellTK, SummarizedBenchmark, zinbwave |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scRNAseq_1.8.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/scRNAseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scRNAseq |
| Package Short Url | https://bioconductor.org/packages/scRNAseq/ |
| Package Downloads Report | Download Stats |