alpineData

This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see alpineData.

Data for the alpine package vignette


Bioconductor version: 3.8

A small subset of paired-end RNA-seq reads from four samples of the GEUVADIS project.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("alpineData")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alpineData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alpineData")
tximport HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExpressionData, RNASeqData, SequencingData
Version 1.8.0
License GPL (>=2)
Depends ExperimentHub, GenomicAlignments
Imports utils, AnnotationHub
System Requirements
URL
See More
Suggests GenomicAlignments, knitr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me alpine
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alpineData_1.8.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/alpineData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alpineData
Package Short Url https://bioconductor.org/packages/alpineData/
Package Downloads Report Download Stats