HiCDataLymphoblast

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see HiCDataLymphoblast.

Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009


Bioconductor version: 3.8

The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.

Author: Borbala Mifsud

Maintainer: Borbala Mifsud <Borbala.Mifsud at cancer.org.uk>

Citation (from within R, enter citation("HiCDataLymphoblast")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HiCDataLymphoblast")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataLymphoblast")
package_vignettes.pdf PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, Homo_sapiens_Data
Version 1.18.0
License GPL-3
Depends
Imports
System Requirements
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Suggests GOTHiC, ShortRead
Linking To
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Depends On Me
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Suggests Me GOTHiC
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HiCDataLymphoblast_1.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/HiCDataLymphoblast
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiCDataLymphoblast
Package Short Url https://bioconductor.org/packages/HiCDataLymphoblast/
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