greengenes13.5MgDb

This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see greengenes13.5MgDb.

Greengenes 13.5 16S rRNA Database Annotation Data


Bioconductor version: 3.8

Metagenome annotation package with for the Greengenes 16S rRNA Database version 13.5. Contains a MgDb-class object, defined in the metagenomeFeatures package.

Author: Nathan D. Olson <nolson at umias.umd.edu>, Joseph Nathaniel Paulson, Hector Corrada-Bravo

Maintainer: Nathan D. Olson <nolson at umiacs.umd.edu>

Citation (from within R, enter citation("greengenes13.5MgDb")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("greengenes13.5MgDb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews AnnotationData, Microbiome
Version 2.0.0
License Artistic-2.0
Depends R (>= 3.4.0), methods
Imports metagenomeFeatures(>= 1.9.9)
System Requirements
URL https://github.com/HCBravoLab/greengenes13.5MgDb
Bug Reports https://github.com/HCBravoLab/greengenes13.5MgDb/issues
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package greengenes13.5MgDb_2.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url https://bioconductor.org/packages/greengenes13.5MgDb/
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