MafDb.gnomADex.r2.0.1.hs37d5

This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MafDb.gnomADex.r2.0.1.hs37d5 (replaced with MafDb.gnomADex.r2.1.hs37d5).

Minor allele frequency data from gnomAD exomes release 2.0.1 for hs37d5


Bioconductor version: 3.8

Store minor allele frequency data from the Genome Aggregation Database (gnomAD exomes release 2.0.1) for the human genome version hs37d5.

Author: Robert Castelo

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("MafDb.gnomADex.r2.0.1.hs37d5")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MafDb.gnomADex.r2.0.1.hs37d5")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, Genetics, GenomicScores, Homo_sapiens
Version 3.8.0
License Artistic-2.0
Depends R (>= 3.0.0), GenomicScores(>= 1.3.19)
Imports utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome
System Requirements
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Suggests SNPlocs.Hsapiens.dbSNP144.GRCh37
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MafDb.gnomADex.r2.0.1.hs37d5_3.8.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url https://bioconductor.org/packages/MafDb.gnomADex.r2.0.1.hs37d5/
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