## ----style-knitr, eval=TRUE, echo=FALSE, results='asis'--------------------
BiocStyle::latex()

## ----opts, include=FALSE, echo=FALSE---------------------------------------
knitr::opts_chunk$set(concordance=TRUE, 
                      eval = TRUE,
                      cache = TRUE,
                      resize.width="0.45\\textwidth",
                      fig.align='center',
                      tidy = FALSE,
                      message=FALSE)

## ----install, eval=FALSE---------------------------------------------------
#  if (!requireNamespace("BiocManager", quietly=TRUE)){
#      install.packages("BiocManager")
#  }
#  BiocManager::install("TPP")

## ----package---------------------------------------------------------------
library("TPP")

## ----load_tr_data----------------------------------------------------------
data("hdacTR_smallExample")

## ----result_path_TR--------------------------------------------------------
resultPath = file.path(getwd(), 'NPARC_Vignette_Example')

## ----analyzeTR, eval = TRUE------------------------------------------------
TRresults <- analyzeTPPTR(configTable = hdacTR_config, data = hdacTR_data, 
                          method = "splinefit", nCores = 2, resultPath = resultPath, 
                          plotCurves = FALSE)