Changes in version 0.99.24 (2018-10-22) + adjust NEWS file to new format according to ?news: o entries are grouped according to version, with version header “Changes in version” at the beginning of a line, followed by a version number, optionally followed by an ISO 8601 format date, possibly parenthesized o entries may be grouped according to category, with a category header (different from a version header) starting at the beginning of a line o entries are written as itemize-type lists, using one of o, *, - or + as item tag. Entries must be indented, and ideally use a common indentation for the item texts Changes in version 0.99.23 (2018-10-16) + improve createStructuralAdjacency function Changes in version 0.99.20 (2018-08-06) + replace psych::corr.test by WGCNA::corAndPvalue to improve speed Changes in version 0.99.19 (2018-07-26) + print message when model calculation in createStatisticalAdjacency is finished Changes in version 0.99.18 (2018-07-19) + set rfPermute.formula to rfPermute.default in order to use num.cores Changes in version 0.99.17 (2018-07-19) + set num.cores to 1 in test_statistical for randomForest Changes in version 0.99.15 (2018-07-16) + do not import stabsel from stabs Changes in version 0.99.14 (2018-07-14) + use BiocManager instead of BiocLite for installation Changes in version 0.99.13 (2018-07-12) + do not export functions threeDotsCall and addToList Changes in version 0.99.12 (2018-07-12) + use BiocStyle package for vignette + remove Makefile + use BiocParallel instead of parallel, for instance use bplapply instead of mclapply Changes in version 0.99.11 (2018-07-03) + speed up function rtCorrection by vectorizing Changes in version 0.99.10 (2018-07-03) + speed up function createStructuralAdjacencyMatrix by vectorizing Changes in version 0.99.9 (2018-06-26) + change 1:... to seq_len() Changes in version 0.99.8 (2018-06-26) + implement function rtCorrection Changes in version 0.99.6 (2018-06-13) + use camelCaps for functions + use no spaces between '=' and named arguments Changes in version 0.99.6 (2018-06-12) + fix typo in lasso function Changes in version 0.99.5 (2018-06-12) + change 1:... to seq_len() Changes in version 0.99.4 (2018-06-12) + change 1:... to seq_len() Changes in version 0.99.3 (2018-06-11) + remove sum check for correlation Changes in version 0.99.2 (2018-06-11) + require R version >= 3.5 Changes in version 0.99.1 (2018-06-11) + remove bugs that there are no WARNINGS and ERRORs when running R CMD check and R CMD BiocCheck + reduce file size of peaklist_example.RData + submit to Bioconductor Changes in version 0.99.0 (2018-05-14) + implement functionality to calculate statistical models of correlation (Pearson, Spearman), LASSO, Random Forest, Context likelihood or relatedness network algorithm, algorithm for the reconstruction of accurate cellular networks, constraint-based structure learning algorithm + implement the function create_statistical_network to calcululate the consensus matrix from the different statistically-infered networks + implement the function create_structural_network to calculate molecular weight differences and create a network + implement the function combine_structural_statistical to combine the structurally-derived and statistically-derived network + implement model partial and semi-partial pearson/spearman correlation using the ppcor package