yaqcaffy
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see yaqcaffy.
Affymetrix expression data quality control and reproducibility analysis
Bioconductor version: 3.8
Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.
Author: Laurent Gatto
Maintainer: Laurent Gatto <lg390 at cam.ac.uk>
citation("yaqcaffy")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("yaqcaffy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("yaqcaffy")| yaqcaffy: Affymetrix quality control and MAQC reproducibility | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Microarray, OneChannel, QualityControl, ReportWriting, Software |
| Version | 1.42.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
| License | Artistic-2.0 |
| Depends | simpleaffy(>= 2.19.3), methods |
| Imports | stats4 |
| System Requirements | |
| URL |
See More
| Suggests | MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | qcmetrics |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | yaqcaffy_1.42.0.tar.gz |
| Windows Binary | yaqcaffy_1.42.0.zip |
| Mac OS X 10.11 (El Capitan) | yaqcaffy_1.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/yaqcaffy |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/yaqcaffy |
| Bioc Package Browser | https://code.bioconductor.org/browse/yaqcaffy/ |
| Package Short Url | https://bioconductor.org/packages/yaqcaffy/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |