rSFFreader
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see rSFFreader.
rSFFreader reads in sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers
Bioconductor version: 3.8
rSFFreader reads sequence, qualities and clip point values from sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers into similar classes as are present for fastq files.
Author: Matt Settles <mattsettles at gmail.com>, Sam Hunter, Brice Sarver, Ilia Zhbannikov, Kyu-Chul Cho
Maintainer: Matt Settles <mattsettles at gmail.com>
citation("rSFFreader")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rSFFreader")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rSFFreader")| An introduction to rSFFreader | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Sequencing, Software |
| Version | 0.30.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | Artistic-2.0 |
| Depends | ShortRead(>= 1.23.17) |
| Imports | methods, Biostrings, IRanges |
| System Requirements | |
| URL |
See More
| Suggests | xtable |
| Linking To | S4Vectors(>= 0.13.8), IRanges, XVector, Biostrings |
| Enhances | |
| Depends On Me | |
| Imports Me | hiReadsProcessor |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rSFFreader_0.30.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | rSFFreader_0.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rSFFreader |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rSFFreader |
| Bioc Package Browser | https://code.bioconductor.org/browse/rSFFreader/ |
| Package Short Url | https://bioconductor.org/packages/rSFFreader/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |