networkBMA
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see networkBMA.
Regression-based network inference using Bayesian Model Averaging
Bioconductor version: 3.8
An extension of Bayesian Model Averaging (BMA) for network construction using time series gene expression data. Includes assessment functions and sample test data.
Author: Chris Fraley, Wm. Chad Young, Ling-Hong Hung, Kaiyuan Shi, Ka Yee Yeung, Adrian Raftery (with contributions from Kenneth Lo)
Maintainer: Ka Yee Yeung <kayee at u.washington.edu>
citation("networkBMA")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("networkBMA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("networkBMA")| networkBMA | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Bayesian, GeneExpression, GeneTarget, GraphsAndNetwork, Network, NetworkInference, Software |
| Version | 2.22.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.15.0), stats, utils, BMA, Rcpp (>= 0.10.3), RcppArmadillo (>= 0.3.810.2), RcppEigen (>= 0.3.1.2.1), leaps |
| Imports | |
| System Requirements | liblapack-dev |
| URL |
See More
| Suggests | |
| Linking To | Rcpp, RcppArmadillo, RcppEigen, BH |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | DREAM4 |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | networkBMA_2.22.0.tar.gz |
| Windows Binary | networkBMA_2.22.0.zip |
| Mac OS X 10.11 (El Capitan) | networkBMA_2.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/networkBMA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/networkBMA |
| Bioc Package Browser | https://code.bioconductor.org/browse/networkBMA/ |
| Package Short Url | https://bioconductor.org/packages/networkBMA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |