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igvR

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see igvR.

igvR: integrative genomics viewer


Bioconductor version: 3.8

Access to igv.js, the Integrative Genomics Viewer running in a web browser.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("igvR")):

Installation

To install this package, start R (version "3.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("igvR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("igvR")
igvR: programmatic access to igv.js, a browser-based genome track viewer HTML R Script
Reference Manual PDF
LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GenomeBrowsers, Software, ThirdPartyClient, Visualization
Version 1.2.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License MIT + file LICENSE
Depends R (>= 3.5.0), GenomicRanges, VariantAnnotation, rtracklayer, BrowserViz(>= 2.0)
Imports methods, BiocGenerics, httpuv, utils
System Requirements
URL
See More
Suggests RUnit, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package igvR_1.2.0.tar.gz
Windows Binary igvR_1.2.0.zip
Mac OS X 10.11 (El Capitan) igvR_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/igvR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/igvR
Bioc Package Browser https://code.bioconductor.org/browse/igvR/
Package Short Url https://bioconductor.org/packages/igvR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive