condcomp
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see condcomp.
Condition Comparison in scRNA-seq Data
Bioconductor version: 3.8
For a given clustered data, which can also be split into two conditions, this package provides a way to perform a condition comparison on said clustered data. The comparison is performed on each cluster. Several statistics are used and, when analysed in conjunction, they might give some insight regarding the heterogeneity of some of the clusters.
Author: Diogo P. P. Branco [aut, cre]
Maintainer: Diogo P. P. Branco <diogo.pp.branco at gmail.com>
citation("condcomp")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("condcomp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("condcomp")| scRNA-seq data heterogeneity with condcomp | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Clustering, ImmunoOncology, SingleCell, Software, Visualization |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL (>=2) | file LICENSE |
| Depends | R (>= 3.5.0) |
| Imports | cluster, ggplot2, ggrepel, outliers |
| System Requirements | |
| URL |
See More
| Suggests | testthat, knitr, rmarkdown, BiocStyle, Matrix, Seurat, monocle, HSMMSingleCell |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | condcomp_1.0.1.tar.gz |
| Windows Binary | condcomp_1.0.1.zip |
| Mac OS X 10.11 (El Capitan) | condcomp_1.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/condcomp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/condcomp |
| Bioc Package Browser | https://code.bioconductor.org/browse/condcomp/ |
| Package Short Url | https://bioconductor.org/packages/condcomp/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |