LMGene

This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see LMGene.

LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays


Bioconductor version: 3.8

LMGene package for analysis of microarray data using a linear model and glog data transformation

Author: David Rocke, Geun Cheol Lee, John Tillinghast, Blythe Durbin-Johnson, and Shiquan Wu

Maintainer: Blythe Durbin-Johnson <bpdurbin at ucdavis.edu>

Citation (from within R, enter citation("LMGene")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LMGene")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LMGene")
LMGene User's Guide PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, Microarray, Preprocessing, Software
Version 2.38.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License LGPL
Depends R (>= 2.10.0), Biobase(>= 2.5.5), multtest, survival, affy
Imports
System Requirements
URL http://dmrocke.ucdavis.edu/software.html
See More
Suggests affydata
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LMGene_2.38.0.tar.gz
Windows Binary LMGene_2.38.0.zip
Mac OS X 10.11 (El Capitan) LMGene_2.38.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/LMGene
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LMGene
Bioc Package Browser https://code.bioconductor.org/browse/LMGene/
Package Short Url https://bioconductor.org/packages/LMGene/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive