GeneSelector
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GeneSelector.
Stability and Aggregation of ranked gene lists
Bioconductor version: 3.8
The term 'GeneSelector' refers to a filter selecting those genes which are consistently identified as differentially expressed using various statistical procedures. 'Selected' genes are those present at the top of the list in various ranking methods (currently 14). In addition, the stability of the findings can be taken into account in the final ranking by examining perturbed versions of the original data set, e.g. by leaving samples, swapping class labels, generating bootstrap replicates or adding noise. Given multiple ranked lists, one can use aggregation methods in order to find a synthesis.
Author: Martin Slawski <ms at cs.uni-sb.de>, Anne-Laure Boulesteix <boulesteix at ibe.med.uni-muenchen.de>.
Maintainer: Martin Slawski <ms at cs.uni-sb.de>
citation("GeneSelector")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneSelector")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneSelector")| GeneSelector.pdf | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Software, StatisticalMethod |
| Version | 2.32.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.5.1), methods, stats, Biobase |
| Imports | multtest, siggenes, samr, limma |
| System Requirements | |
| URL |
See More
| Suggests | multtest, siggenes, samr, limma |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GeneSelector_2.32.0.tar.gz |
| Windows Binary | GeneSelector_2.32.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | GeneSelector_2.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GeneSelector |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeneSelector |
| Package Short Url | https://bioconductor.org/packages/GeneSelector/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |