GeneOverlap
This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GeneOverlap.
Test and visualize gene overlaps
Bioconductor version: 3.8
Test two sets of gene lists and visualize the results.
Author: Li Shen, Mount Sinai <shenli.sam at gmail.com>
Maintainer: Li Shen, Mount Sinai <shenli.sam at gmail.com>
Citation (from within R, enter
citation("GeneOverlap")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneOverlap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneOverlap")| Testing and visualizing gene overlaps with the "GeneOverlap" package | R Script | |
| Reference Manual |
Details
| biocViews | MultipleComparison, Software, Visualization |
| Version | 1.18.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | GPL-3 |
| Depends | |
| Imports | stats, RColorBrewer, gplots, methods |
| System Requirements | |
| URL | http://shenlab-sinai.github.io/shenlab-sinai/ |
See More
| Suggests | RUnit, BiocGenerics, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | CEMiTool |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GeneOverlap_1.18.0.tar.gz |
| Windows Binary | GeneOverlap_1.18.0.zip |
| Mac OS X 10.11 (El Capitan) | GeneOverlap_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GeneOverlap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeneOverlap |
| Bioc Package Browser | https://code.bioconductor.org/browse/GeneOverlap/ |
| Package Short Url | https://bioconductor.org/packages/GeneOverlap/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.8 | Source Archive |