%\VignetteIndexEntry{PGPC}
%\VignettePackage{PGPC}
%\VignetteEngine{knitr::knitr}
\documentclass[10pt,a4paper,oneside]{article}

\newcommand{\thetitle}{to be decided }
\usepackage[utf8]{inputenc} 

\usepackage{calc}

\usepackage{subcaption}
\newcommand{\subfloat}[2][need a sub-caption]{\subcaptionbox{#1}{#2}}

\newcommand{\mycaption}[1]{
  \begin{minipage}[t][10mm][b]{\linewidth}
   \centering \huge\textbf{Figure #1}
  \end{minipage}
}

%\pagestyle{empty}
<<style, eval=TRUE, echo=FALSE, results="asis">>=
BiocStyle::latex()
@

\bioctitle[PGCP, 2014]{\textsf{\textbf{A chemical-genetic interaction map of
small molecules using high-throughput imaging in cancer cells}\\
Marco Breinig, Felix A. Klein, Wolfgang Huber and Michael Boutros\\
Accepted for publication at Molecular Systems Biology}}

\author{Felix A. Klein \\[1em] European Molecular Biology Laboratory (EMBL),
\\ Heidelberg, Germany\\
\texttt{felix.klein@embl.de}}


\begin{document}

<<include=FALSE>>=
knitr::opts_chunk$set(concordance=TRUE, 
                      resize.width="0.45\\textwidth", 
                      fig.align='center',
                      tidy = FALSE,
                      message=FALSE)
@


\maketitle
\tableofcontents

<<Introduction, cache=TRUE, child=file.path('src', 'Introduction.Rnw')>>=
@

<<ImageAndDataProcessing, cache=TRUE, child=file.path('src', 'ImageAndDataProcessing.Rnw')>>=
@

<<FeatureSelectionAndInteractions, cache=TRUE, child=file.path('src', 'FeatureSelectionAndInteractions.Rnw')>>=
@

<<Phenoprints, cache=TRUE, child=file.path('src', 'Phenoprints.Rnw')>>=
@

<<InteractionStarPlots, cache=TRUE, child=file.path('src', 'InteractionStarPlots.Rnw')>>=
@

<<CellLineClustering, cache=TRUE, child=file.path('src', 'CellLineClustering.Rnw')>>=
@

<<InteractionNetwork, cache=TRUE, child=file.path('src', 'InteractionNetwork.Rnw')>>=
@

<<DrugClustering, cache=TRUE, child=file.path('src', 'DrugClustering.Rnw')>>=
@

<<DrugCombinations, cache=TRUE, child=file.path('src', 'DrugCombinations.Rnw')>>=
@

<<ProteasomeFollowUp, cache=TRUE, child=file.path('src', 'ProteasomeFollowUp.Rnw')>>=
@

\section{Session Info}
<<sessionInfo, echo=FALSE>>=
sessionInfo()
@

\bibliography{literature}

\end{document}