CHANGES IN VERSION 1.9.1 ------------------------ o no changes, check if package passes R CMD build and R CMD check without any error messages and vignette can be run without any errors [2018-04-16 Mon] CHANGES IN VERSION 1.7.0 ------------------------ o implement calculation for parameter m = 0 in NDP [2017-11-14 Tue] CHANGES IN VERSION 1.5.0 ------------------------ o no changes, check if package passes R CMD build and R CMD check without any error messages and vignette can be run without any errors [2017-10-20 Fri] CHANGES IN VERSION 1.1.6 ------------------------ o correct bug fix for msp binning when there is only one entry for msp entry [2017-06-05 Mon] o improve function binning when there is only one fragment [2017-06-05 Mon] CHANGES IN VERSION 1.1.5 ------------------------ o extend unit tests for shinyApp, plottingFunctions and convert2MSP [2017-04-03 Mon] CHANGES IN VERSION 1.1.4 ------------------------ o change MSP class, create slots mz, rt, names, classes, information and adduct [2017-01-28 Sat] o add tabPanels in shinyCircos (Main, Appearance) [2017-01-28 Sat] o rearrange position of legend, implement option to show/not show l egend [2017-01-28 Sat] o rescale plot when changing window size, allow for further scaling/descaling of the plot [2017-01-28 Sat] o adjust convertMSP2MSP to new class MSP, create unit tests [2017-01-29 Sun] o include msp2msp matrix, a test data set for convertMSP2MSP [2017-01-29 Sun] o set methods for names, classes, adduct and information [2017-01-29 Sun] o change the interactive shinyCircos such that the user can update the annotation data of an MSP object (name, class, information and adduct ion information) [2017-01-29 Sun] CHANGES IN VERSION 1.1.3 ------------------------ o use new email adress [2016-12-05 Mon] o use option to calculate MSP-object from msp-file directly [2016-12-05 Mon] CHANGES IN VERSION 1.1.2 ------------------------ o use absolute masses when calculating similarities in createSimilarityMatrix (bug fix) [2016-11-17 Thu] o add option links in highlight, i.e. should links be plotted or not? [2016-11-17 Thu] CHANGES IN VERSION 1.1.1 ------------------------ o change slider input as such that one is able to select a lower and lower bound instead of only a lower bound [2016-11-04 Fri] CHANGES IN VERSION 0.99.6 ------------------------- o improve allocation of clicked features in shinyCircos [2016-10-10 Mon] o change line width and colour in plotCircos [2016-10-10 Mon] CHANGES IN VERSION 0.99.5 ------------------------- o add arguments colour and transparency for functions plotCircos and highlight [2016-09-15 Thu] CHANGES IN VERSION 0.99.4 ------------------------- o add arguments splitIndMZ and splitIndRT in function convert2MSP and fix bug (colnames classes instead of class) in convert2MSP [2016-08-17 Wed] o update vignette, unit tests and manuals [2016-08-17 Wed] CHANGES IN VERSION 0.99.3 ------------------------- o remove verbatim Textouput(help) in shinyApp [2016-08-01 Mon] o change function createSimilarityMatrix in order that it does not change ordering of row names [2016-08-01 Mon] o update unit tests and manuals [2016-08-01 Mon] CHANGES IN VERSION 0.99.2 ------------------------- o do not reorder again in createOrderedSimMat function [2016-07-26 Tue] o change allocatePrecursor2mz function such, that it is compatible with all sd01 and sd02 objects [2016-07-26 Tue] CHANGES IN VERSION 0.99.1 ------------------------- o rewrite functions that they do not require the argument dfNameGroup (data.frame containing group and unique identifier) any longer [2016-06-14 Tue] o the function binning uses now the function cut to create bins binning has two methods implemented to calculate from these bins [2016-06-10 Fri] median and mean m/z values from the fragment m/z values [2016-06-10 Fri] o documentation about data sets is extended [2016-06-10 Fri] o include 'Suggests: BiocGenerics' in the DESCRIPTION file [2016-06-10 Fri] CHANGES IN VERSION 0.99.0 ------------------------- o submit package to Bioconductor file tracker [2016-05-14 Sat] CHANGES IN VERSION 0.98.0 ------------------------- o add information of hovered objects in shinyCircos [2016-04-16 Tue] o allow for subsetting of MSP objects [2016-04-12 Tue] o add unit tests for exported functions [2016-04-12 Tue]