vidger
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see vidger.
Create rapid visualizations of RNAseq data in R
Bioconductor version: 3.7
The aim of vidger is to rapidly generate information-rich visualizations for the interpretation of differential gene expression results from three widely-used tools: Cuffdiff, DESeq2, and edgeR.
Author: Brandon Monier, Adam McDermaid, Qin Ma
Maintainer: Brandon Monier <brandon.monier at sdstate.edu>
citation("vidger")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("vidger")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("vidger")| Visualizing RNA-seq data with ViDGER | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, RNASeq, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | GPL-2 | file LICENSE |
| Depends | R (>= 3.5) |
| Imports | Biobase, DESeq2, edgeR, knitr, rmarkdown, GGally, ggplot2, scales, stats, SummarizedExperiment, tidyr, utils |
| System Requirements | |
| URL |
See More
| Suggests | testthat, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | vidger_1.0.0.tar.gz |
| Windows Binary | vidger_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | vidger_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/vidger |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/vidger |
| Package Short Url | https://bioconductor.org/packages/vidger/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |