synergyfinder

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see synergyfinder.

Calculate and Visualize Synergy Scores for Drug Combinations


Bioconductor version: 3.7

Efficient implementations for all the popular synergy scoring models for drug combinations, including HSA, Loewe, Bliss and ZIP and visualization of the synergy scores as either a two-dimensional or a three-dimensional interaction surface over the dose matrix.

Author: Liye He <liye.he at helsinki.fi>, Jing Tang <jing.tang at helsinki.fi>

Maintainer: Liye He <liye.he at helsinki.fi>

Citation (from within R, enter citation("synergyfinder")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("synergyfinder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("synergyfinder")
synergyfinder PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Software, Statistical Method
Version 1.6.1
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Mozilla Public License 2.0 + file LICENSE
Depends
Imports drc (>= 2.5-12), reshape2 (>= 1.4.1), SpatialExtremes (>= 2.0-2), ggplot2 (>= 2.1.0), gridBase (>= 0.4-7), grid (>= 3.2.4), lattice (>= 0.20-33), gplots (>= 3.0.0), nleqslv (>= 3.0), stats (>= 3.3.0), graphics (>= 3.3.0), grDevices (>= 3.3.0)
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package synergyfinder_1.6.1.tar.gz
Windows Binary synergyfinder_1.6.1.zip
Mac OS X 10.11 (El Capitan) synergyfinder_1.6.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/synergyfinder
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/synergyfinder
Package Short Url https://bioconductor.org/packages/synergyfinder/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive