subSeq
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see subSeq.
Subsampling of high-throughput sequencing count data
Bioconductor version: 3.7
Subsampling of high throughput sequencing count data for use in experiment design and analysis.
Author: David Robinson, John D. Storey, with contributions from Andrew J. Bass
Maintainer: Andrew J. Bass <ajbass at princeton.edu>, John D. Storey <jstorey at princeton.edu>
citation("subSeq")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("subSeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("subSeq")| subSeq Example | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software, Transcription |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.2) |
| Imports | data.table, dplyr, tidyr, ggplot2, magrittr, qvalue(>= 1.99), digest, Biobase |
| System Requirements | |
| URL | http://github.com/StoreyLab/subSeq |
See More
| Suggests | limma, edgeR, DESeq2, DEXSeq(>= 1.9.7), testthat, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | subSeq_1.10.0.tar.gz |
| Windows Binary | subSeq_1.10.0.zip |
| Mac OS X 10.11 (El Capitan) | subSeq_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/subSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/subSeq |
| Package Short Url | https://bioconductor.org/packages/subSeq/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |