spliceR
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see spliceR.
Classification of alternative splicing and prediction of coding potential from RNA-seq data.
Bioconductor version: 3.7
An R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.
Author: Johannes Waage <johannes.waage at gmail.com>, Kristoffer Vitting-Seerup <k.vitting.seerup at gmail.com>
Maintainer: Johannes Waage <johannes.waage at gmail.com>, Kristoffer Vitting-Seerup <k.vitting.seerup at gmail.com>
citation("spliceR")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("spliceR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spliceR")| spliceR Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, Sequencing, Software, Transcription, Visualization |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 2.15.0), methods, cummeRbund, rtracklayer, VennDiagram, RColorBrewer, plyr |
| Imports | GenomicRanges, IRanges |
| System Requirements | |
| URL |
See More
| Suggests | BSgenome.Hsapiens.UCSC.hg19, BSgenome |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | spliceR_1.22.0.tar.gz |
| Windows Binary | spliceR_1.22.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | spliceR_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/spliceR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spliceR |
| Package Short Url | https://bioconductor.org/packages/spliceR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |