snapCGH
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see snapCGH.
Segmentation, normalisation and processing of aCGH data.
Bioconductor version: 3.7
Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.
Author: Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne
Maintainer: John Marioni <marioni at uchicago.edu>
citation("snapCGH")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("snapCGH")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("snapCGH")
Segmentation Overview | R Script | |
Reference Manual |
Details
biocViews | CopyNumberVariation, Microarray, Preprocessing, Software, TwoChannel |
Version | 1.50.0 |
In Bioconductor since | BioC 1.8 (R-2.3) (18 years) |
License | GPL |
Depends | limma, DNAcopy, methods |
Imports | aCGH, cluster, DNAcopy, GLAD, graphics, grDevices, limma, methods, stats, tilingArray, utils |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | ADaCGH2 |
Suggests Me | beadarraySNP |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | snapCGH_1.50.0.tar.gz |
Windows Binary | snapCGH_1.50.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | snapCGH_1.50.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/snapCGH |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/snapCGH |
Package Short Url | https://bioconductor.org/packages/snapCGH/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |