qpgraph
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see qpgraph.
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
Bioconductor version: 3.7
Estimate gene and eQTL networks from high-throughput expression and genotyping assays.
Author: Robert Castelo [aut, cre], Alberto Roverato [aut]
Maintainer: Robert Castelo <robert.castelo at upf.edu>
Citation (from within R, enter
citation("qpgraph")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("qpgraph")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qpgraph")
BasicUsersGuide.pdf | ||
Estimate eQTL networks using qpgraph | R Script | |
Reverse-engineer transcriptional regulatory networks using qpgraph | R Script | |
Simulating molecular regulatory networks using qpgraph | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | GeneExpression, GeneRegulation, GeneticVariability, Genetics, GraphAndNetwork, Microarray, NetworkInference, Pathways, SNP, Software, Transcription |
Version | 2.14.0 |
In Bioconductor since | BioC 2.4 (R-2.9) (15 years) |
License | GPL (>= 2) |
Depends | R (>= 3.4) |
Imports | methods, parallel, Matrix (>= 1.0), grid, annotate, graph(>= 1.45.1), Biobase, S4Vectors, BiocParallel, AnnotationDbi, IRanges, GenomeInfoDb, GenomicRanges, GenomicFeatures, mvtnorm, qtl, Rgraphviz |
System Requirements | |
URL | https://github.com/rcastelo/qpgraph |
Bug Reports | https://github.com/rcastelo/rcastelo/issues |
See More
Suggests | RUnit, BiocGenerics, BiocStyle, genefilter, org.EcK12.eg.db, rlecuyer, snow, Category, GOstats |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | clipper |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | qpgraph_2.14.0.tar.gz |
Windows Binary | qpgraph_2.14.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | qpgraph_2.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/qpgraph |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qpgraph |
Package Short Url | https://bioconductor.org/packages/qpgraph/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |