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psygenet2r

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see psygenet2r.

psygenet2r - An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders


Bioconductor version: 3.7

Package to retrieve data from PsyGeNET database (www.psygenet.org) and to perform comorbidity studies with PsyGeNET's and user's data.

Author: Alba Gutierrez-Sacristan [aut, cre], Carles Hernandez-Ferrer [aut], Jaun R. Gonzalez [aut], Laura I. Furlong [aut]

Maintainer: Alba Gutierrez-Sacristan <alba.gutierrez at upf.edu>

Citation (from within R, enter citation("psygenet2r")):

Installation

To install this package, start R (version "3.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("psygenet2r")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("psygenet2r")
psygenet2r: An R package for querying PsyGeNET and to perform comorbidity studies in psychiatric disorders HTML R Script
psygenet2r: Case study on GWAS on bipolar disorder HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews BiomedicalInformatics, DataImport, DataRepresentation, Genetics, Infrastructure, Software
Version 1.12.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License MIT + file LICENSE
Depends R (>= 3.4)
Imports stringr, RCurl, igraph, ggplot2, reshape2, grid, parallel, biomaRt, BgeeDB, topGO, BiocInstaller, Biobase, labeling, GO.db
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package psygenet2r_1.12.0.tar.gz
Windows Binary psygenet2r_1.12.0.zip
Mac OS X 10.11 (El Capitan) psygenet2r_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/psygenet2r
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/psygenet2r
Package Short Url https://bioconductor.org/packages/psygenet2r/
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Old Source Packages for BioC 3.7 Source Archive