plethy

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see plethy.

R framework for exploration and analysis of respirometry data


Bioconductor version: 3.7

This package provides the infrastructure and tools to import, query and perform basic analysis of whole body plethysmography and metabolism data. Currently support is limited to data derived from Buxco respirometry instruments as exported by their FinePointe software.

Author: Daniel Bottomly [aut, cre], Marty Ferris [ctb], Beth Wilmot [aut], Shannon McWeeney [aut]

Maintainer: Daniel Bottomly <bottomly at ohsu.edu>

Citation (from within R, enter citation("plethy")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("plethy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("plethy")
plethy PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, DataRepresentation, Infastructure, Software, TimeCourse, biocViews
Version 1.18.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-3
Depends R (>= 3.1.0), methods, DBI (>= 0.5-1), RSQLite (>= 1.1), BiocGenerics, S4Vectors
Imports Streamer, IRanges, reshape2, plyr, RColorBrewer, ggplot2, Biobase
System Requirements
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Suggests RUnit, BiocStyle
Linking To
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package plethy_1.18.0.tar.gz
Windows Binary plethy_1.18.0.zip
Mac OS X 10.11 (El Capitan) plethy_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/plethy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/plethy
Package Short Url https://bioconductor.org/packages/plethy/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive