nucleR
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see nucleR.
Nucleosome positioning package for R
Bioconductor version: 3.7
Nucleosome positioning for Tiling Arrays and NGS experiments.
Author: Oscar Flores, Ricard Illa
Maintainer: Ricard Illa <r.illa.pujagut at gmail.com>
Citation (from within R, enter
citation("nucleR")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("nucleR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("nucleR")| Vignette Title | R Script | |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | ChIPSeq, Coverage, DataImport, Genetics, Microarray, NucleosomePositioning, QualityControl, Sequencing, Software |
| Version | 2.12.1 |
| In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
| License | LGPL (>= 3) |
| Depends | methods |
| Imports | Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rsamtools, S4Vectors, ShortRead, dplyr, ggplot2, magrittr, parallel, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | Starr, BiocStyle, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | nucleR_2.12.1.tar.gz |
| Windows Binary | nucleR_2.12.1.zip |
| Mac OS X 10.11 (El Capitan) | nucleR_2.12.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/nucleR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/nucleR |
| Bioc Package Browser | https://code.bioconductor.org/browse/nucleR/ |
| Package Short Url | https://bioconductor.org/packages/nucleR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |