metaCCA
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see metaCCA.
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Canonical Correlation Analysis
Bioconductor version: 3.7
metaCCA performs multivariate analysis of a single or multiple GWAS based on univariate regression coefficients. It allows multivariate representation of both phenotype and genotype. metaCCA extends the statistical technique of canonical correlation analysis to the setting where original individual-level records are not available, and employs a covariance shrinkage algorithm to achieve robustness.
Author: Anna Cichonska <anna.cichonska at helsinki.fi>
Maintainer: Anna Cichonska <anna.cichonska at helsinki.fi>
citation("metaCCA")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("metaCCA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metaCCA")| metaCCA | R Script | |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Genetics, GenomeWideAssociation, Regression, SNP, Software, StatisticalMethod |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | |
| System Requirements | |
| URL | http://biorxiv.org/content/early/2015/07/16/022665 |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | metaCCA_1.8.0.tar.gz |
| Windows Binary | metaCCA_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | metaCCA_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/metaCCA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/metaCCA |
| Package Short Url | https://bioconductor.org/packages/metaCCA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |