iontree

DOI: 10.18129/B9.bioc.iontree    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see iontree.

Data management and analysis of ion trees from ion-trap mass spectrometry

Bioconductor version: Release (3.7)

Ion fragmentation provides structural information for metabolite identification. This package provides utility functions to manage and analyse MS2/MS3 fragmentation data from ion trap mass spectrometry. It was designed for high throughput metabolomics data with many biological samples and a large numer of ion trees collected. Tests have been done with data from low-resolution mass spectrometry but could be readily extended to precursor ion based fragmentation data from high resoultion mass spectrometry.

Author: Mingshu Cao

Maintainer: Mingshu Cao <mingshu.cao at agresearch.co.nz>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("iontree")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iontree")

 

PDF	R Script	MSn
PDF		Reference Manual
Text		LICENSE

Details

biocViews	MassSpectrometry, Metabolomics, Software
Version	1.23.1
In Bioconductor since	BioC 2.9 (R-2.14) (7 years)
License	GPL-2
Depends	methods, rJava, RSQLite, XML
Imports
LinkingTo
Suggests	iontreeData
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iontree_1.23.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/iontree
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iontree
Package Short Url	http://bioconductor.org/packages/iontree/
Package Downloads Report	Download Stats