intansv

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see intansv.

Integrative analysis of structural variations

Bioconductor version: 3.7

This package provides efficient tools to read and integrate structural variations predicted by popular softwares. Annotation and visulation of structural variations are also implemented in the package.

Author: Wen Yao <ywhzau at gmail.com>

Maintainer: Wen Yao <ywhzau at gmail.com>

Citation (from within R, enter citation("intansv")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("intansv")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("intansv")

An Introduction to intansv	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, Genetics, Sequencing, Software
Version	1.22.0
In Bioconductor since	BioC 2.13 (R-3.0) (10.5 years)
License	Artistic-2.0
Depends	R (>= 2.14.0), plyr, ggbio, GenomicRanges
Imports	BiocGenerics, IRanges
System Requirements
URL

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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	intansv_1.22.0.tar.gz
Windows Binary	intansv_1.22.0.zip
Mac OS X 10.11 (El Capitan)	intansv_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/intansv
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/intansv
Bioc Package Browser	https://code.bioconductor.org/browse/intansv/
Package Short Url	https://bioconductor.org/packages/intansv/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.7	Source Archive