ibh
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ibh.
Interaction Based Homogeneity for Evaluating Gene Lists
Bioconductor version: 3.7
This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.
Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.
Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>
citation("ibh")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ibh")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ibh")| ibh | R Script | |
| Reference Manual |
Details
| biocViews | DataImport, GraphAndNetwork, NetworkEnrichment, QualityControl, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
| License | GPL (>= 2) |
| Depends | simpIntLists |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | yeastCC, stats |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ibh_1.28.0.tar.gz |
| Windows Binary | ibh_1.28.0.zip |
| Mac OS X 10.11 (El Capitan) | ibh_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ibh |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ibh |
| Package Short Url | https://bioconductor.org/packages/ibh/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |