globalSeq
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see globalSeq.
Testing for association between RNA-Seq and high-dimensional data
Bioconductor version: 3.7
The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size.
Author: Armin Rauschenberger [aut, cre]
Maintainer: Armin Rauschenberger <a.rauschenberger at vumc.nl>
citation("globalSeq")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("globalSeq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("globalSeq")
globalSeq | R Script | |
pkgdown | HTML | |
pkgdown | HTML | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DifferentialExpression, DimensionReduction, ExomeSeq, ExonArray, GeneExpression, GenomeWideAssociation, MultipleComparison, RNASeq, Regression, Sequencing, Software, Transcriptomics, WholeGenome, miRNA |
Version | 1.8.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
License | GPL-3 |
Depends | R (>= 3.0.0) |
Imports | |
System Requirements | |
URL | https://github.com/rauschenberger/globalSeq |
Bug Reports | https://github.com/rauschenberger/globalSeq/issues |
See More
Suggests | knitr, testthat, SummarizedExperiment |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | globalSeq_1.8.0.tar.gz |
Windows Binary | globalSeq_1.8.0.zip |
Mac OS X 10.11 (El Capitan) | globalSeq_1.8.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/globalSeq |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/globalSeq |
Package Short Url | https://bioconductor.org/packages/globalSeq/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |