chromPlot
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see chromPlot.
Global visualization tool of genomic data
Bioconductor version: 3.7
Package designed to visualize genomic data along the chromosomes, where the vertical chromosomes are sorted by number, with sex chromosomes at the end.
Author: Ricardo A. Verdugo and Karen Y. Orostica
Maintainer: Karen Y. Orostica <korostica09 at gmail.com>
citation("chromPlot")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("chromPlot")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chromPlot")| General Manual | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, DataRepresentation, FunctionalGenomics, Genetics, Sequencing, Software, Visualization |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL (>= 2) |
| Depends | stats, utils, graphics, grDevices, datasets, base, biomaRt, GenomicRanges, R (>= 3.1.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | qtl, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | chromPlot_1.8.0.tar.gz |
| Windows Binary | chromPlot_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | chromPlot_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/chromPlot |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/chromPlot |
| Package Short Url | https://bioconductor.org/packages/chromPlot/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |