ccmap
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ccmap.
Combination Connectivity Mapping
Bioconductor version: 3.7
Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.
Author: Alex Pickering
Maintainer: Alex Pickering <alexvpickering at gmail.com>
Citation (from within R, enter
citation("ccmap")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ccmap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ccmap")| ccmap vignette | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Software, Transcription |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | AnnotationDbi(>= 1.36.2), BiocInstaller(>= 1.24.0), ccdata(>= 1.1.2), doParallel (>= 1.0.10), data.table (>= 1.10.4), foreach (>= 1.4.3), parallel (>= 3.3.3), xgboost (>= 0.6.4), lsa (>= 0.73.1) |
| System Requirements | |
| URL |
See More
| Suggests | crossmeta, knitr, rmarkdown, testthat, lydata |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | crossmeta |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ccmap_1.6.0.tar.gz |
| Windows Binary | ccmap_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | ccmap_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ccmap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ccmap |
| Package Short Url | https://bioconductor.org/packages/ccmap/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |