affyQCReport
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see affyQCReport.
QC Report Generation for affyBatch objects
Bioconductor version: 3.7
This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.
Author: Craig Parman <craig.parman at bifx.org>, Conrad Halling <conrad.halling at bifx.org>, Robert Gentleman
Maintainer: Craig Parman <craig.parman at bifx.org>
citation("affyQCReport")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affyQCReport")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affyQCReport")
affyQCReport: Methods for Generating Affymetrix QC Reports | R Script | |
Reference Manual |
Details
biocViews | Microarray, OneChannel, QualityControl, Software |
Version | 1.58.0 |
In Bioconductor since | BioC 1.7 (R-2.2) (18.5 years) |
License | LGPL (>= 2) |
Depends | Biobase(>= 1.13.16), affy, lattice |
Imports | affy, affyPLM, Biobase, genefilter, graphics, grDevices, lattice, RColorBrewer, simpleaffy, stats, utils, xtable |
System Requirements | |
URL |
See More
Suggests | tkWidgets(>= 1.5.23), affydata(>= 1.4.1) |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | BiocCaseStudies |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | affyQCReport_1.58.0.tar.gz |
Windows Binary | affyQCReport_1.58.0.zip |
Mac OS X 10.11 (El Capitan) | affyQCReport_1.58.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/affyQCReport |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affyQCReport |
Package Short Url | https://bioconductor.org/packages/affyQCReport/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |