StarBioTrek
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see StarBioTrek.
StarBioTrek
Bioconductor version: 3.7
This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.
Author: Claudia Cava, Isabella Castiglioni
Maintainer: Claudia Cava <claudia.cava at ibfm.cnr.it>
citation("StarBioTrek")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("StarBioTrek")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("StarBioTrek")| StarBioTrek:Application Examples | R Script | |
| Vignette Title | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneRegulation, KEGG, Network, Pathways, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 3.3) |
| Imports | SpidermiR, KEGGREST, org.Hs.eg.db, AnnotationDbi, e1071, ROCR, grDevices, igraph |
| System Requirements | |
| URL | https://github.com/claudiacava/StarBioTrek |
| Bug Reports | https://github.com/claudiacava/StarBioTrek/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, qgraph, png, grid |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | StarBioTrek_1.6.0.tar.gz |
| Windows Binary | StarBioTrek_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | StarBioTrek_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/StarBioTrek |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/StarBioTrek |
| Package Short Url | https://bioconductor.org/packages/StarBioTrek/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |