RaggedExperiment
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see RaggedExperiment.
Representation of Sparse Experiments and Assays Across Samples
Bioconductor version: 3.7
This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns.
Author: Martin Morgan [aut, cre], Marcel Ramos [aut]
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
citation("RaggedExperiment")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RaggedExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RaggedExperiment")
RaggedExperiment | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataRepresentation, Infrastructure, Software |
Version | 1.4.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4.0), GenomicRanges |
Imports | BiocGenerics, IRanges, methods, S4Vectors, stats, SummarizedExperiment |
System Requirements | |
URL | |
Bug Reports | https://github.com/Bioconductor/RaggedExperiment/issues |
See More
Suggests | knitr, testthat, MultiAssayExperiment |
Linking To | |
Enhances | |
Depends On Me | TxRegInfra |
Imports Me | omicsPrint, RTCGAToolbox |
Suggests Me | MultiAssayExperiment, MultiDataSet |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | RaggedExperiment_1.4.0.tar.gz |
Windows Binary | RaggedExperiment_1.4.0.zip |
Mac OS X 10.11 (El Capitan) | RaggedExperiment_1.4.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/RaggedExperiment |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RaggedExperiment |
Package Short Url | https://bioconductor.org/packages/RaggedExperiment/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |