PAPi
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PAPi.
Predict metabolic pathway activity based on metabolomics data
Bioconductor version: 3.7
The Pathway Activity Profiling - PAPi - is an R package for predicting the activity of metabolic pathways based solely on a metabolomics data set containing a list of metabolites identified and their respective abundances in different biological samples. PAPi generates hypothesis that improves the final biological interpretation. See Aggio, R.B.M; Ruggiero, K. and Villas-Boas, S.G. (2010) - Pathway Activity Profiling (PAPi): from metabolite profile to metabolic pathway activity. Bioinformatics.
Author: Raphael Aggio
Maintainer: Raphael Aggio <raphael.aggio at gmail.com>
citation("PAPi")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PAPi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PAPi")
Applying PAPi | R Script | |
PAPi.pdf | ||
Reference Manual |
Details
biocViews | MassSpectrometry, Metabolomics, Software |
Version | 1.20.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
License | GPL(>= 2) |
Depends | R (>= 2.15.2), svDialogs, KEGGREST |
Imports | |
System Requirements | |
URL |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | PAPi_1.20.0.tar.gz |
Windows Binary | PAPi_1.20.0.zip |
Mac OS X 10.11 (El Capitan) | PAPi_1.20.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/PAPi |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PAPi |
Package Short Url | https://bioconductor.org/packages/PAPi/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |