GOFunction
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GOFunction.
GO-function: deriving biologcially relevant functions from statistically significant functions
Bioconductor version: 3.7
The GO-function package provides a tool to address the redundancy that result from the GO structure or multiple annotation genes and derive biologically relevant functions from the statistically significant functions based on some intuitive assumption and statistical testing.
Author: Jing Wang <jingwang.uestc at gmail.com>
Maintainer: Jing Wang <jingwang.uestc at gmail.com>
citation("GOFunction")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GOFunction")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOFunction")| GO-function | R Script | |
| Reference Manual |
Details
| biocViews | GO, GeneSetEnrichment, Microarray, Pathways, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.11.0), methods, Biobase(>= 2.8.0), graph(>= 1.26.0), Rgraphviz(>= 1.26.0), GO.db(>= 2.4.1), AnnotationDbi(>= 1.10.2), SparseM (>= 0.85) |
| Imports | methods, Biobase, graph, Rgraphviz, GO.db, AnnotationDbi, DBI, SparseM |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GOFunction_1.28.0.tar.gz |
| Windows Binary | GOFunction_1.28.0.zip |
| Mac OS X 10.11 (El Capitan) | GOFunction_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GOFunction |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GOFunction |
| Package Short Url | https://bioconductor.org/packages/GOFunction/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |