EmpiricalBrownsMethod
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see EmpiricalBrownsMethod.
Uses Brown's method to combine p-values from dependent tests
Bioconductor version: 3.7
Combining P-values from multiple statistical tests is common in bioinformatics. However, this procedure is non-trivial for dependent P-values. This package implements an empirical adaptation of Brown’s Method (an extension of Fisher’s Method) for combining dependent P-values which is appropriate for highly correlated data sets found in high-throughput biological experiments.
Author: William Poole
Maintainer: David Gibbs <dgibbs at systemsbiology.org>
citation("EmpiricalBrownsMethod")
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Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EmpiricalBrownsMethod")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EmpiricalBrownsMethod")
Empirical Browns Method | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | GeneExpression, Pathways, Software, StatisticalMethod |
Version | 1.8.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.2.0) |
Imports | |
System Requirements | |
URL | https://github.com/IlyaLab/CombiningDependentPvaluesUsingEBM.git |
See More
Suggests | BiocStyle, testthat, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | NADfinder |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | EmpiricalBrownsMethod_1.8.0.tar.gz |
Windows Binary | EmpiricalBrownsMethod_1.8.0.zip |
Mac OS X 10.11 (El Capitan) | EmpiricalBrownsMethod_1.8.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/EmpiricalBrownsMethod |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EmpiricalBrownsMethod |
Package Short Url | https://bioconductor.org/packages/EmpiricalBrownsMethod/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |