ENCODExplorer
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ENCODExplorer.
A compilation of ENCODE metadata
Bioconductor version: 3.7
This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.
Author: Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Audrey Lemacon <lemacon.audrey at ulaval.ca>, Louis Gendron <louisg.212 at gmail.com> Astrid-Louise Deschenes, <astrid-louise.deschenes at crchudequebec.ulaval.ca> and Arnaud Droit <arnaud.droit at crchudequebec.ulaval.ca >
Maintainer: Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>
citation("ENCODExplorer")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ENCODExplorer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ENCODExplorer")| Data update | HTML | R Script |
| Database model | HTML | R Script |
| Introduction to ENCODExplorer | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 2.6.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3), shiny, DT, shinythemes |
| Imports | tools, jsonlite, parallel, RCurl, tidyr, data.table, dplyr, stringr, stringi |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/CharlesJB/ENCODExplorer/issues |
See More
| Suggests | RUnit, BiocGenerics, knitr, curl, httr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | TSRchitect |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ENCODExplorer_2.6.0.tar.gz |
| Windows Binary | ENCODExplorer_2.6.0.zip |
| Mac OS X 10.11 (El Capitan) | ENCODExplorer_2.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ENCODExplorer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ENCODExplorer |
| Package Short Url | https://bioconductor.org/packages/ENCODExplorer/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |