DupChecker
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DupChecker.
a package for checking high-throughput genomic data redundancy in meta-analysis
Bioconductor version: 3.7
Meta-analysis has become a popular approach for high-throughput genomic data analysis because it often can significantly increase power to detect biological signals or patterns in datasets. However, when using public-available databases for meta-analysis, duplication of samples is an often encountered problem, especially for gene expression data. Not removing duplicates would make study results questionable. We developed a Bioconductor package DupChecker that efficiently identifies duplicated samples by generating MD5 fingerprints for raw data.
Author: Quanhu Sheng, Yu Shyr, Xi Chen
Maintainer: "Quanhu SHENG" <shengqh at gmail.com>
citation("DupChecker")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DupChecker")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DupChecker")
Validate genomic data with "DupChecker" package | R Script | |
Reference Manual |
Details
biocViews | Preprocessing, Software |
Version | 1.18.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
License | GPL (>= 2) |
Depends | |
Imports | tools, R.utils, RCurl |
System Requirements | |
URL |
See More
Suggests | knitr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | DupChecker_1.18.0.tar.gz |
Windows Binary | DupChecker_1.18.0.zip |
Mac OS X 10.11 (El Capitan) | DupChecker_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/DupChecker |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DupChecker |
Package Short Url | https://bioconductor.org/packages/DupChecker/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |