CAnD
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CAnD.
Perform Chromosomal Ancestry Differences (CAnD) Analyses
Bioconductor version: 3.7
Functions to perform the CAnD test on a set of ancestry proportions. For a particular ancestral subpopulation, a user will supply the estimated ancestry proportion for each sample, and each chromosome or chromosomal segment of interest. A p-value for each chromosome as well as an overall CAnD p-value will be returned for each test. Plotting functions are also available.
Author: Caitlin McHugh, Timothy Thornton
Maintainer: Caitlin McHugh <mchughc at uw.edu>
citation("CAnD")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CAnD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CAnD")
Detecting heterogenity in population structure across chromosomes with the "CAnD" package | R Script | |
Reference Manual |
Details
biocViews | GeneticVariability, Genetics, SNP, Software, StatisticalMethod |
Version | 1.12.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
License | Artistic-2.0 |
Depends | |
Imports | methods, ggplot2, reshape |
System Requirements | |
URL |
See More
Suggests | RUnit, BiocGenerics, BiocStyle |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | CAnD_1.12.0.tar.gz |
Windows Binary | CAnD_1.12.0.zip |
Mac OS X 10.11 (El Capitan) | CAnD_1.12.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/CAnD |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CAnD |
Package Short Url | https://bioconductor.org/packages/CAnD/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |