BCRANK
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see BCRANK.
Predicting binding site consensus from ranked DNA sequences
Bioconductor version: 3.7
Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search
Author: Adam Ameur <Adam.Ameur at genpat.uu.se>
Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>
Citation (from within R, enter
citation("BCRANK")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BCRANK")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BCRANK")
BCRANK | R Script | |
Reference Manual |
Details
biocViews | GeneRegulation, MotifDiscovery, Software |
Version | 1.42.0 |
In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
License | GPL-2 |
Depends | methods |
Imports | Biostrings |
System Requirements | |
URL |
See More
Suggests | seqLogo |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | BCRANK_1.42.0.tar.gz |
Windows Binary | BCRANK_1.42.0.zip (32- & 64-bit) |
Mac OS X 10.11 (El Capitan) | BCRANK_1.42.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/BCRANK |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BCRANK |
Package Short Url | https://bioconductor.org/packages/BCRANK/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |