AnnotationHub
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see AnnotationHub.
Client to access AnnotationHub resources
Bioconductor version: 3.7
This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.
Author: Martin Morgan [cre], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("AnnotationHub")
):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AnnotationHub")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AnnotationHub")
AnnotationHub: Access the AnnotationHub Web Service | HTML | R Script |
AnnotationHub: AnnotationHub HOW TO's | HTML | R Script |
AnnotationHub: Creating An AnnotationHub Package | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, GUI, Infrastructure, Software, ThirdPartyClient |
Version | 2.12.1 |
In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
License | Artistic-2.0 |
Depends | BiocGenerics(>= 0.15.10) |
Imports | utils, methods, grDevices, RSQLite, BiocInstaller, curl, AnnotationDbi(>= 1.31.19), S4Vectors, interactiveDisplayBase, httr, yaml |
System Requirements | |
URL |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | AnnotationHub_2.12.1.tar.gz |
Windows Binary | AnnotationHub_2.12.1.zip |
Mac OS X 10.11 (El Capitan) | AnnotationHub_2.12.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/AnnotationHub |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AnnotationHub |
Bioc Package Browser | https://code.bioconductor.org/browse/AnnotationHub/ |
Package Short Url | https://bioconductor.org/packages/AnnotationHub/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.7 | Source Archive |