leeBamViews

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see leeBamViews.

leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009


Bioconductor version: 3.6

data from PMID 19096707; prototype for managing multiple NGS samples

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("leeBamViews")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("leeBamViews")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("leeBamViews")
managing multiple NGS samples with bamViews PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, RNASeqData, SNPData, Saccharomyces_cerevisiae_Data, SequencingData
Version 1.14.0
License Artistic 2.0
Depends R (>= 2.15.0), Biobase, Rsamtools(>= 0.1.50), BSgenome
Imports GenomicRanges, GenomicAlignments, methods
System Requirements
URL
See More
Suggests GenomeGraphs, biomaRt, org.Sc.sgd.db, edgeR
Linking To
Enhances multicore
Depends On Me
Imports Me
Suggests Me EDASeq
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package leeBamViews_1.14.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/leeBamViews
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/leeBamViews
Package Short Url https://bioconductor.org/packages/leeBamViews/
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