RCytoscape
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RCytoscape.
Display and manipulate graphs in Cytoscape
Bioconductor version: 3.6
Interactvive viewing and exploration of graphs, connecting R to Cytoscape.
Author: Paul Shannon
Maintainer: Paul Shannon <pshannon at systemsbiology.org>
citation("RCytoscape")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RCytoscape")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RCytoscape")| RCytoscape Overview | R Script | |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | GraphAndNetwork, Software, ThirdPartyClient, Visualization |
| Version | 1.27.1 |
| In Bioconductor since | BioC 2.7 (R-2.12) (13.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.14.0), graph(>= 1.31.0), XMLRPC (>= 0.2.4) |
| Imports | methods, XMLRPC, BiocGenerics |
| System Requirements | |
| URL | http://rcytoscape.systemsbiology.net |
See More
| Suggests | RUnit |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | RamiGO |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RCytoscape_1.27.1.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RCytoscape |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RCytoscape |
| Package Short Url | https://bioconductor.org/packages/RCytoscape/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |