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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("esetVis")
In most cases, you don't need to download the package archive at all.
esetVis
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see esetVis.
Visualizations of expressionSet Bioconductor object
Bioconductor version: 3.4
Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.
Author: Laure Cougnaud <laure.cougnaud at openanalytics.eu>
Maintainer: Laure Cougnaud <laure.cougnaud at openanalytics.eu>
Citation (from within R,
enter citation("esetVis")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("esetVis")
Documentation
| HTML | R Script | esetVis package |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataRepresentation, DimensionReduction, Pathways, PrincipalComponent, Software, Visualization |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | mpm, hexbin, Rtsne, MLP, grid, Biobase, MASS, stats, utils, grDevices |
| LinkingTo | |
| Suggests | ggplot2, ggvis, rbokeh, ggrepel, knitr, rmarkdown, ALL, hgu95av2.db, AnnotationDbi, pander, SummarizedExperiment |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | esetVis_1.0.1.tar.gz |
| Windows Binary | esetVis_1.0.1.zip |
| Mac OS X 10.9 (Mavericks) | esetVis_1.0.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/esetVis/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/esetVis/ |
| Package Downloads Report | Download Stats |
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